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obj
- Variable in class ij.plugin.frame.jedit.tokenmarker.
TokenMarker.LineInfo
This is for use by the token marker implementations themselves.
objectsEqual(Object, Object)
- Static method in class ij.plugin.frame.jedit.
MiscUtilities
Returns if two strings are equal.
offScreenX(int)
- Method in class ij.gui.
ImageCanvas
Converts a screen x-coordinate to an offscreen x-coordinate.
offScreenXD(int)
- Method in class ij.gui.
ImageCanvas
Converts a screen x-coordinate to a floating-point offscreen x-coordinate.
offScreenY(int)
- Method in class ij.gui.
ImageCanvas
Converts a screen y-coordinate to an offscreen y-coordinate.
offScreenYD(int)
- Method in class ij.gui.
ImageCanvas
Converts a screen y-coordinate to a floating-point offscreen y-coordinate.
offScrGc
- Variable in class ij2x.plugin.
ColorIcon
offset
- Variable in class ij.io.
FileInfo
offset
- Variable in class ij.plugin.frame.jedit.syntax.
Token
The start offset of this token.
offsetToX(int, int)
- Method in class ij.plugin.frame.jedit.
JEditTextArea
Converts an offset in a line into an x co-ordinate.
offsetToX(Chunk, int)
- Static method in class ij.plugin.frame.jedit.syntax.
Chunk
Converts an offset in a chunk list into an x co-ordinate.
offsetToX(int)
- Method in class ij.plugin.frame.jedit.syntax.
Chunk
OJJ
- Static variable in class ij.io.
Opener
okForFits(ImagePlus)
- Static method in class ij.io.
FileSaver
okForGif(ImagePlus)
- Static method in class ij.io.
FileSaver
okForJpeg(ImagePlus)
- Static method in class ij.io.
FileSaver
Always returns true.
oldcolor
- Variable in class ij2x.plugin.
ColorIcon
oldHeight
- Variable in class ij.gui.
Roi
oldsettingColor
- Variable in class ij2x.plugin.
ThreeColor
oldWidth
- Variable in class ij.gui.
Roi
oldX
- Variable in class ij.gui.
Roi
oldY
- Variable in class ij.gui.
Roi
ONE
- Static variable in class ij.plugin.filter.
EDM
Unit in old make16bitEDM: this pixel value corresponds to a distance of one pixel.
onePixelWide
- Static variable in class ij.gui.
Roi
OPEN
- Static variable in class ij.gui.
Arrow
open(String, int, int, int, int, int)
- Static method in class ij.gui.
NewImage
open()
- Static method in class ij.
IJ
Displays a file open dialog box and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file selected by the user.
open(String)
- Static method in class ij.
IJ
Opens and displays a tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file.
open(String, int)
- Static method in class ij.
IJ
Opens and displays the nth image in the specified tiff stack.
open()
- Method in class ij.io.
FileOpener
Opens the image and displays it.
open(boolean)
- Method in class ij.io.
FileOpener
Opens the image.
open()
- Method in class ij.io.
Opener
Displays a file open dialog box and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file selected by the user.
open(String)
- Method in class ij.io.
Opener
Opens and displays a tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file.
OPEN
- Static variable in interface ij.macro.
MacroConstants
open(String)
- Static method in class ij.
Macro
open(String)
- Static method in class ij.measure.
ResultsTable
Opens a tab or comma delimited text file as a ResultsTable.
open(String)
- Method in class ij.plugin.
DICOM
Opens the specified file as a DICOM.
OPEN
- Static variable in class ij.plugin.filter.
RankFilters
open(String)
- Static method in class ij.plugin.
FolderOpener
Opens the images in the specified directory as a stack.
open(String, String)
- Method in class ij.plugin.frame.
Editor
open(String)
- Static method in class ij.plugin.
LutLoader
Opens the specified ImageJ LUT and returns it as an IndexColorModel.
open(InputStream)
- Static method in class ij.plugin.
LutLoader
Opens an ImageJ LUT using an InputStream and returns it as an IndexColorModel.
open()
- Method in class ij.plugin.
TextReader
Displays a file open dialog and opens the specified text file as a float image.
open(String)
- Method in class ij.plugin.
TextReader
Opens the specified text file as a float image.
open(String, String)
- Method in class ij2x.plugin.frame.
Editor
open100Percent
- Static variable in class ij.
Prefs
Open images at 100% magnification
open16bitAsciiImage(StreamTokenizer, int, int)
- Method in class ij.plugin.
PGM_Reader
open16bitRawImage(InputStream, int, int)
- Method in class ij.plugin.
PGM_Reader
openAction
- Static variable in class ij.plugin.frame.
Editor
openAction
- Static variable in class ij2x.plugin.
ControlBarPanel
openAction
- Static variable in class ij2x.plugin.frame.
Editor
openAndAddToRecent(String)
- Method in class ij.io.
Opener
Opens the specified file and adds it to the File/Open Recent menu.
openAsciiImage(StreamTokenizer, int, byte[])
- Method in class ij.plugin.
PGM_Reader
openAsString(String)
- Static method in class ij.
IJ
Opens a text file as a string.
openAsVirtualStack(boolean)
- Method in class ij.plugin.
FolderOpener
openButton
- Variable in class ij2x.plugin.
ControlBarPanel
OpenDialog
- Class in
ij.io
This class displays a dialog window from which the user can select an input file.
OpenDialog(String, String)
- Constructor for class ij.io.
OpenDialog
Displays a file open dialog with 'title' as the title.
OpenDialog(String, String, String)
- Constructor for class ij.io.
OpenDialog
Displays a file open dialog, using the specified default directory and file name.
openDicomsAsFloat
- Static variable in class ij.
Prefs
Open DICOMs as 32-bit float images
OPENED
- Static variable in class ij.
ImagePlus
Opener
- Class in
ij.io
Opens tiff (and tiff stacks), dicom, fits, pgm, jpeg, bmp or gif images, and look-up tables, using a file open dialog or a path.
Opener()
- Constructor for class ij.io.
Opener
openFile(File)
- Method in class ij.plugin.
DragAndDrop
Open a file.
openFile(String)
- Method in class ij.plugin.
PGM_Reader
openFolder(String)
- Method in class ij.plugin.
FolderOpener
Opens the images in the specified directory as a stack.
openFromByteArray(byte[])
- Static method in class ij.io.
RoiDecoder
Opens an ROI from a byte array.
openFromIJJar(String)
- Method in class ij.plugin.
MacroInstaller
Returns a text file contained in ij.jar.
openHeader(StreamTokenizer)
- Method in class ij.plugin.
PGM_Reader
openImage(String)
- Static method in class ij.
IJ
Opens the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image and returns an ImagePlus object if successful.
openImage(String, int)
- Static method in class ij.
IJ
Opens the nth image of the specified tiff stack.
openImage()
- Static method in class ij.
IJ
Opens an image using a file open dialog and returns it as an ImagePlus object.
openImage()
- Method in class ij.io.
ImportDialog
Displays the dialog and opens the specified image or images.
openImage(String, String)
- Method in class ij.io.
Opener
Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
openImage(String)
- Method in class ij.io.
Opener
Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg.
openImage(String, int)
- Method in class ij.io.
Opener
Open the nth image of the specified tiff stack.
openMultiple()
- Method in class ij.io.
Opener
Displays a JFileChooser and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text files selected by the user.
openNextDir
- Variable in class ij.io.
FileInfo
openNextName
- Variable in class ij.io.
FileInfo
openRawImage(InputStream, int, byte[])
- Method in class ij.plugin.
PGM_Reader
openResultsTable(String)
- Static method in class ij.io.
Opener
Opens a tab or comma delimited text file in the Results window.
openRoi(String)
- Method in class ij.io.
Opener
Attempts to open the specified ROI, returning null if unsuccessful.
openRoi(String, String)
- Method in class ij.plugin.
RoiReader
openTiff(String, String)
- Method in class ij.io.
Opener
Attempts to open the specified file as a tiff.
openTiff(String, int)
- Method in class ij.io.
Opener
Opens the nth image of the specified TIFF stack.
openTiff(InputStream, String)
- Method in class ij.io.
Opener
Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.
openTiffStack(FileInfo[])
- Method in class ij.io.
Opener
Attemps to open a tiff file as a stack.
openURL(String)
- Method in class ij.io.
Opener
Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.
openURL(String)
- Static method in class ij.plugin.
BrowserLauncher
Attempts to open the default web browser to the given URL.
openUrlAsString(String)
- Static method in class ij.
IJ
Opens a URL and returns the contents as a string.
openWithHandleExtraFileTypes(String, int[])
- Method in class ij.io.
Opener
openZip(String)
- Method in class ij.io.
Opener
Opens a single TIFF or DICOM contained in a ZIP archive, or a ZIPed collection of ".roi" files created by the ROI manager.
OperatingSystem
- Class in
ij.plugin.frame.jedit
Operating system detection routines.
OperatingSystem()
- Constructor for class ij.plugin.frame.jedit.
OperatingSystem
OPERATOR
- Static variable in class ij.plugin.frame.jedit.syntax.
Token
OPERATOR
- Static variable in class ij.plugin.frame.jedit.tokenmarker.
Token
Operator token id.
OPTIONS
- Static variable in class ij.io.
RoiDecoder
Options
- Class in
ij.plugin
This plugin implements most of the commands in the Edit/Options sub-menu.
Options()
- Constructor for class ij.plugin.
Options
OPTIONS
- Static variable in class ij.
Prefs
OPTIONS2
- Static variable in class ij.
Prefs
or(ShapeRoi)
- Method in class ij.gui.
ShapeRoi
Unary union operator.
OR
- Static variable in interface ij.process.
Blitter
dst=dst OR src
or(int)
- Method in class ij.process.
FloatProcessor
or(int)
- Method in class ij.process.
ImageProcessor
Binary OR of each pixel in the image or ROI with 'value'.
or(int)
- Method in class ij.process.
ShortProcessor
ORIENTATION
- Static variable in class ij.io.
TiffDecoder
originalBitDepth
- Variable in class ij.process.
FHT
Used by the FFT class.
originalColorModel
- Variable in class ij.process.
FHT
Used by the FFT class.
originalHeight
- Variable in class ij.process.
FHT
Used by the FFT class.
originalWidth
- Variable in class ij.process.
FHT
Used by the FFT class.
Orthogonal_Views
- Class in
ij.plugin
Orthogonal_Views()
- Constructor for class ij.plugin.
Orthogonal_Views
OUT_OF_BOUNDS
- Static variable in interface gnu.regexp.
CharIndexed
Defines a constant (0xFFFF was somewhat arbitrarily chosen) that can be returned by the charAt() function indicating that the specified index is out of range.
OUTLIERS
- Static variable in class ij.plugin.filter.
RankFilters
OUTLINE
- Static variable in class ij.io.
RoiDecoder
outline()
- Method in class ij.process.
BinaryProcessor
outline()
- Method in class ij.process.
ByteProcessor
OUTLINE_KEY
- Static variable in class ij.gui.
Arrow
OUTLINES
- Static variable in class ij.plugin.filter.
ParticleAnalyzer
outOfMemory(String)
- Static method in class ij.
IJ
Displays an "out of memory" message to the "Log" window.
OVAL
- Static variable in class ij.gui.
Roi
OVAL
- Static variable in class ij.gui.
Toolbar
OVAL_ROI
- Static variable in class ij.gui.
Toolbar
OvalRoi
- Class in
ij.gui
Oval region of interest
OvalRoi(int, int, int, int)
- Constructor for class ij.gui.
OvalRoi
Creates a new OvalRoi.
OvalRoi(int, int, ImagePlus)
- Constructor for class ij.gui.
OvalRoi
Starts the process of creating a user-defined OvalRoi.
OvalRoi(int, int, int, int, ImagePlus)
- Constructor for class ij.gui.
OvalRoi
Deprecated.
OVER_UNDER_LUT
- Static variable in class ij.process.
ImageProcessor
Overlay
- Class in
ij.gui
An Overlay is a list of Rois that can be drawn non-destructively on an Image.
Overlay()
- Constructor for class ij.gui.
Overlay
Constructs an empty Overlay.
Overlay(Roi)
- Constructor for class ij.gui.
Overlay
Constructs an Overlay and adds the specified Roi.
overlay
- Variable in class ij.gui.
Roi
overlay
- Variable in class ij.io.
FileInfo
OVERLAY
- Static variable in interface ij.macro.
MacroConstants
OVERLAY_ADDITION
- Static variable in class ij.
Undo
OVERLAY_MASKS
- Static variable in class ij.plugin.filter.
ParticleAnalyzer
OVERLAY_OUTLINES
- Static variable in class ij.plugin.filter.
ParticleAnalyzer
OverlayCommands
- Class in
ij.plugin
This plugin implements the commands in the Image/Overlay menu.
OverlayCommands()
- Constructor for class ij.plugin.
OverlayCommands
OVERWRITE
- Static variable in class ij.plugin.frame.jedit.
InputHandler
overwrite
- Variable in class ij.plugin.frame.jedit.
JEditTextArea
overwriteSetSelectedText(String)
- Method in class ij.plugin.frame.jedit.
JEditTextArea
Similar to
setSelectedText()
, but overstrikes the appropriate number of characters if overwrite mode is enabled.
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