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TABLE
- Static variable in class ij.io.
Opener
TABLE
- Static variable in class ij.plugin.
NewPlugin
TABLE_FULL
- Static variable in class ij.measure.
ResultsTable
tabSize
- Variable in class ij.plugin.frame.jedit.
LNTextAreaPainter
tabSize
- Variable in class ij.plugin.frame.jedit.
TextAreaPainter
TAN
- Static variable in interface ij.macro.
MacroConstants
tempColor
- Static variable in class ij2x.plugin.
AlignRGB
tempLabel
- Variable in class ij2x.plugin.
HorizontalGradient
tempLabel
- Variable in class ij2x.plugin.
ThreeColor
temporarilyHide()
- Method in class ij.gui.
Roi
Deprecated
testDummy()
- Method in class ij2x.plugin.frame.
JXCollapsiblePaneVisualCheck
do nothing test - keep the testrunner happy.
TEXT
- Static variable in class ij.gui.
Toolbar
TEXT
- Static variable in class ij.io.
Opener
TEXT
- Static variable in class ij.io.
RoiDecoder
TEXT_FILE
- Static variable in class ij.plugin.
NewPlugin
textArea
- Variable in class ij.plugin.frame.jedit.
LNTextAreaPainter
textArea
- Variable in class ij.plugin.frame.jedit.
TextAreaPainter
textArea1
- Variable in class ij.gui.
GenericDialog
textArea2
- Variable in class ij.gui.
GenericDialog
TextAreaDefaults
- Class in
ij.plugin.frame.jedit
Encapsulates default settings for a text area.
TextAreaDefaults()
- Constructor for class ij.plugin.frame.jedit.
TextAreaDefaults
TextAreaPainter
- Class in
ij.plugin.frame.jedit
The text area repaint manager.
TextAreaPainter(JEditTextArea, TextAreaDefaults)
- Constructor for class ij.plugin.frame.jedit.
TextAreaPainter
Creates a new repaint manager.
TextAreaPainter.Highlight
- Interface in
ij.plugin.frame.jedit
Highlight interface.
TextEncoder
- Class in
ij.io
Saves an image described by an ImageProcessor object as a tab-delimited text file.
TextEncoder(ImageProcessor, Calibration, int)
- Constructor for class ij.io.
TextEncoder
Constructs a TextEncoder from an ImageProcessor and optional Calibration.
textFieldUpdate(DocumentEvent)
- Method in class ij2x.plugin.
Translator
TextFileReader
- Class in
ij.plugin
This plugin displays the contents of a text file in a window.
TextFileReader()
- Constructor for class ij.plugin.
TextFileReader
TeXTokenMarker
- Class in
ij.plugin.frame.jedit.tokenmarker
TeX token marker.
TeXTokenMarker()
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
TeXTokenMarker
TextPanel
- Class in
ij.text
This is an unlimited size text panel with tab-delimited, labeled and resizable columns.
TextPanel()
- Constructor for class ij.text.
TextPanel
Constructs a new TextPanel.
TextPanel(String)
- Constructor for class ij.text.
TextPanel
Constructs a new TextPanel.
TextReader
- Class in
ij.plugin
This plugin opens a tab or comma delimeted text file as an image.
TextReader()
- Constructor for class ij.plugin.
TextReader
TextRoi
- Class in
ij.gui
This class is a rectangular ROI containing text.
TextRoi(int, int, String)
- Constructor for class ij.gui.
TextRoi
Creates a new TextRoi.
TextRoi(int, int, String, Font)
- Constructor for class ij.gui.
TextRoi
Creates a new TextRoi with the specified location and Font.
TextRoi(int, int, String, Font, Color)
- Constructor for class ij.gui.
TextRoi
Deprecated.
TextRoi(int, int, ImagePlus)
- Constructor for class ij.gui.
TextRoi
TextUtilities
- Class in
ij.plugin.frame.jedit
Class with several utility functions used by the text area component.
TextUtilities()
- Constructor for class ij.plugin.frame.jedit.
TextUtilities
textValueChanged(DocumentEvent)
- Method in class ij.gui.
ColorChooser
textValueChanged(AWTEvent, DocumentEvent)
- Method in class ij.gui.
GenericDialog
textValueChanged(DocumentEvent)
- Method in class ij.macro.
FunctionFinder
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
ArrowToolOptions
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Distribution
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Duplicator
textValueChanged(DocumentEvent)
- Method in class ij.plugin.filter.
ImageProperties
textValueChanged(DocumentEvent)
- Method in class ij.plugin.frame.
LineWidthAdjuster
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Histogram
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
RectToolOptions
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Resizer
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Scaler
textValueChanged(DocumentEvent)
- Method in class ij.plugin.
Slicer
textValueChanged(DocumentEvent)
- Method in class ij2x.plugin.
ScaleAll
TextWindow
- Class in
ij.text
Uses a TextPanel to displays text in a window.
TextWindow(String, String, int, int)
- Constructor for class ij.text.
TextWindow
Opens a new single-column text window.
TextWindow(String, String, String, int, int)
- Constructor for class ij.text.
TextWindow
Opens a new multi-column text window.
TextWindow(String, int, int)
- Constructor for class ij.text.
TextWindow
Opens a new text window containing the contents of a text file.
TextWriter
- Class in
ij.plugin
This plugin implements the File/Save As/Text command.
TextWriter()
- Constructor for class ij.plugin.
TextWriter
theLabel
- Variable in class ij.gui.
GenericDialog
theta
- Variable in class ij.process.
EllipseFitter
Angle in radians
thread
- Variable in class ij.gui.
StackWindow
thread
- Variable in class ij.plugin.
Memory_Monitor.Surface
ThreadLister
- Class in
ij.plugin
Displays thread information in a text window.
ThreadLister()
- Constructor for class ij.plugin.
ThreadLister
THREADS
- Static variable in class ij.
Prefs
ThreeColor
- Class in
ij2x.plugin
Title: Description: Copyright: Copyright (c) Company:
ThreeColor()
- Constructor for class ij2x.plugin.
ThreeColor
ThreeColor.ColorIconArea
- Class in
ij2x.plugin
ThreeColor.ColorIconArea()
- Constructor for class ij2x.plugin.
ThreeColor.ColorIconArea
threshold(int)
- Method in class ij.process.
ByteProcessor
Sets pixels less than or equal to level to 0 and all other pixels to 255.
threshold(int)
- Method in class ij.process.
ColorProcessor
Not implemented.
threshold(int)
- Method in class ij.process.
FloatProcessor
Not implemented.
threshold(int)
- Method in class ij.process.
ImageProcessor
Sets pixels less than or equal to level to 0 and all other pixels to 255.
threshold(int)
- Method in class ij.process.
ShortProcessor
ThresholdAdjuster
- Class in
ij.plugin.frame
Adjusts the lower and upper threshold levels of the active image.
ThresholdAdjuster()
- Constructor for class ij.plugin.frame.
ThresholdAdjuster
thresholdButton
- Variable in class ij2x.plugin.
AdjustPanel
thresholdButton
- Variable in class ij2x.plugin.
LutPanel
thresholdButton
- Variable in class ij2x.plugin.
ToolbarBoxControl
Thresholder
- Class in
ij.plugin
This plugin implements the Process/Binary/Make Binary and Convert to Mask commands.
Thresholder()
- Constructor for class ij.plugin.
Thresholder
ThresholdToSelection
- Class in
ij.plugin.filter
ThresholdToSelection()
- Constructor for class ij.plugin.filter.
ThresholdToSelection
throwableToString(Throwable)
- Static method in class ij.plugin.frame.jedit.
MiscUtilities
Returns a string containing the stack trace of the given throwable.
TIFF
- Static variable in class ij.io.
FileInfo
TIFF
- Static variable in class ij.io.
Opener
TIFF_AND_DICOM
- Static variable in class ij.io.
Opener
TiffDecoder
- Class in
ij.io
Decodes single and multi-image TIFF files.
TiffDecoder(String, String)
- Constructor for class ij.io.
TiffDecoder
TiffDecoder(InputStream, String)
- Constructor for class ij.io.
TiffDecoder
TiffEncoder
- Class in
ij.io
Saves an image described by a FileInfo object as an uncompressed, big-endian TIFF file.
TiffEncoder(FileInfo)
- Constructor for class ij.io.
TiffEncoder
TILE_WIDTH
- Static variable in class ij.io.
TiffDecoder
tileMirror(ImageProcessor, int, int, int, int)
- Method in class ij.plugin.filter.
FFTFilter
Puts ImageProcessor (ROI) into a new ImageProcessor of size width x height y at position (x,y).
time(ImagePlus, long)
- Static method in class ij.
IJ
Experimental
Timer
- Class in
ij.plugin
ImageJ plugin for measuring the speed of various Java operations.
Timer()
- Constructor for class ij.plugin.
Timer
tipSuffix
- Static variable in class ij.plugin.frame.
Editor
Suffix applied to the key used in resource file lookups for tooltip text.
tipSuffix
- Static variable in class ij2x.plugin.frame.
Editor
Suffix applied to the key used in resource file lookups for tooltip text.
tipSuffix
- Static variable in class ij2x.plugin.frame.
MonoEditor
Suffix applied to the key used in resource file lookups for tooltip text.
to3dButton
- Variable in class ij2x.plugin.
StackControlPanel
TO_BINARY
- Static variable in interface ij.macro.
MacroConstants
TO_HEX
- Static variable in interface ij.macro.
MacroConstants
TO_LOWER_CASE
- Static variable in interface ij.macro.
MacroConstants
TO_STRING
- Static variable in interface ij.macro.
MacroConstants
TO_UPPER_CASE
- Static variable in interface ij.macro.
MacroConstants
toArray()
- Method in class ij.gui.
Overlay
Returns on array containing the Rois in this Overlay.
toBeginn()
- Method in interface ij2x.plugin.
MovieController
toBeginn()
- Method in class ij2x.plugin.
MovieControllerPanel
tobeginnButton
- Variable in class ij2x.plugin.
MovieControllerPanel
tobeginnButton
- Variable in class ij2x.plugin.
StackControlPanel
tobeginnButton
- Variable in class ij2x.plugin.
TransformPanel
toBufferedImage(Image)
- Static method in class ij2x.plugin.
ControlBarPanel
toBufferedImage1(Image)
- Static method in class ij2x.plugin.
ControlBarPanel
toDouble(float[])
- Static method in class ij.util.
Tools
Converts the float array 'a' to a double array.
toEDM(ImageProcessor)
- Method in class ij.plugin.filter.
EDM
Converts a binary image into a 8-bit grayscale Euclidean Distance Map (EDM).
toEnd()
- Method in interface ij2x.plugin.
MovieController
toEnd()
- Method in class ij2x.plugin.
MovieControllerPanel
toendButton
- Variable in class ij2x.plugin.
MovieControllerPanel
toendButton
- Variable in class ij2x.plugin.
StackControlPanel
toendButton
- Variable in class ij2x.plugin.
TransformPanel
toFloat(int, FloatProcessor)
- Method in class ij.process.
ByteProcessor
Returns a FloatProcessor with the same image, no scaling or calibration (pixel values 0 to 255).
toFloat(int, FloatProcessor)
- Method in class ij.process.
ColorProcessor
Returns a FloatProcessor with one color channel of the image.
toFloat(int, FloatProcessor)
- Method in class ij.process.
FloatProcessor
Returns this FloatProcessor.
toFloat(int, FloatProcessor)
- Method in class ij.process.
ImageProcessor
Returns a FloatProcessor with the image or one color channel thereof.
toFloat(int, FloatProcessor)
- Method in class ij.process.
ShortProcessor
Returns a FloatProcessor with the same image, no scaling or calibration (pixel values 0 to 65535).
toFloat(double[])
- Static method in class ij.util.
Tools
Converts the double array 'a' to a float array.
toFloatArrays()
- Method in class ij.process.
ByteProcessor
toFloatProcessors()
- Method in class ij.process.
ByteProcessor
toFront(JFrame)
- Static method in class ij.
WindowManager
TOGGLE_RECT
- Static variable in class ij.plugin.frame.jedit.
InputHandler
TOK_MASK
- Static variable in interface ij.macro.
MacroConstants
TOK_SHIFT
- Static variable in interface ij.macro.
MacroConstants
token
- Variable in class ij.plugin.frame.jedit.syntax.
ParserRule
Token
- Class in
ij.plugin.frame.jedit.syntax
A linked list of syntax tokens.
Token(byte, int, int, ParserRuleSet)
- Constructor for class ij.plugin.frame.jedit.syntax.
Token
Creates a new token.
Token
- Class in
ij.plugin.frame.jedit.tokenmarker
A linked list of tokens.
Token(int, byte)
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
Token
Creates a new token.
token
- Variable in class ij.plugin.frame.jedit.tokenmarker.
TokenMarker.LineInfo
The id of the last token of the line.
TOKEN_TYPES
- Static variable in class ij.plugin.frame.jedit.syntax.
Token
TokenHandler
- Interface in
ij.plugin.frame.jedit.syntax
Token markers send tokens to implementations of this interface.
tokenize(String)
- Method in class ij.macro.
Tokenizer
Uses a StreamTokenizer to convert an ImageJ macro file into a token stream.
tokenize(String)
- Method in class ij.plugin.frame.
Editor
Take the given string and chop it up into a series of strings on whitespace boundaries.
tokenize(String)
- Method in class ij2x.plugin.frame.
Editor
Take the given string and chop it up into a series of strings on whitespace boundaries.
tokenize(String)
- Method in class ij2x.plugin.frame.
MonoEditor
Take the given string and chop it up into a series of strings on whitespace boundaries.
tokenizeLines()
- Method in class ij.plugin.frame.jedit.
SyntaxDocument
Reparses the document, by passing all lines to the token marker.
tokenizeLines(int, int)
- Method in class ij.plugin.frame.jedit.
SyntaxDocument
Reparses the document, by passing the specified lines to the token marker.
Tokenizer
- Class in
ij.macro
This class converts an imageJ macro file file into a token stream.
Tokenizer()
- Constructor for class ij.macro.
Tokenizer
TokenMarker
- Class in
ij.plugin.frame.jedit.syntax
A token marker splits lines of text into tokens.
TokenMarker()
- Constructor for class ij.plugin.frame.jedit.syntax.
TokenMarker
tokenMarker
- Variable in class ij.plugin.frame.jedit.
SyntaxDocument
TokenMarker
- Class in
ij.plugin.frame.jedit.tokenmarker
A token marker that splits lines of text into tokens.
TokenMarker()
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
TokenMarker
Creates a new
TokenMarker
.
TokenMarker.LineContext
- Class in
ij.plugin.frame.jedit.syntax
Stores persistent per-line syntax parser state.
TokenMarker.LineContext(ParserRuleSet, TokenMarker.LineContext)
- Constructor for class ij.plugin.frame.jedit.syntax.
TokenMarker.LineContext
TokenMarker.LineContext()
- Constructor for class ij.plugin.frame.jedit.syntax.
TokenMarker.LineContext
TokenMarker.LineInfo
- Class in
ij.plugin.frame.jedit.tokenmarker
Inner class for storing information about tokenized lines.
TokenMarker.LineInfo()
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
TokenMarker.LineInfo
Creates a new LineInfo object with token = Token.NULL and obj = null.
TokenMarker.LineInfo(byte, Object)
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
TokenMarker.LineInfo
Creates a new LineInfo object with the specified parameters.
tokenToString(byte)
- Static method in class ij.plugin.frame.jedit.syntax.
Token
Converts a token type constant to a token type string.
TOOL_CHANGED
- Static variable in interface ij.
IJEventListener
TOOL_ID
- Static variable in interface ij.macro.
MacroConstants
Toolbar
- Class in
ij.gui
The ImageJ toolbar.
Toolbar()
- Constructor for class ij.gui.
Toolbar
ToolbarBoxControl
- Class in
ij2x.plugin
Title: Description: Copyright: Copyright (c) 2006 Company:
ToolbarBoxControl()
- Constructor for class ij2x.plugin.
ToolbarBoxControl
toolbarItem
- Static variable in class ij.
Menus
ToolBox
- Class in
ij.gui
ToolBox()
- Constructor for class ij.gui.
ToolBox
toolboxButton
- Static variable in class ij2x.plugin.
CollapsiblePane
Tools
- Class in
ij.util
This class contains static utility methods.
Tools()
- Constructor for class ij.util.
Tools
TOOLS_MENU
- Static variable in class ij.
Menus
TOP
- Static variable in class ij.io.
RoiDecoder
TOP
- Static variable in class ij.plugin.frame.jedit.
JEditTextArea
TOP_MARGIN
- Static variable in class ij.gui.
Plot
the margin width above the plot frame
toString()
- Method in class gnu.regexp.
RE
Return a human readable form of the compiled regular expression, useful for debugging.
toString()
- Method in class gnu.regexp.
REMatch
Returns the string matching the pattern.
toString(int)
- Method in class gnu.regexp.
REMatch
Returns the string matching the given subexpression.
toString()
- Method in class ij.gui.
ImageWindow
toString()
- Method in class ij.gui.
Overlay
toString()
- Method in class ij.gui.
PointRoi
toString()
- Method in class ij.gui.
Roi
toString()
- Method in class ij.
ImagePlus
toString()
- Method in class ij.
ImageStack
toString()
- Method in class ij.io.
FileInfo
toString()
- Method in class ij.macro.
Symbol
toString()
- Method in class ij.measure.
Calibration
toString()
- Method in class ij.measure.
ResultsTable
toString()
- Method in class ij.plugin.frame.jedit.
EBMessage
Returns a string representation of this message.
toString()
- Method in class ij.plugin.frame.jedit.
Mode
Returns a string representation of this edit mode.
toString()
- Method in class ij.plugin.frame.jedit.syntax.
ParserRuleSet
toString()
- Method in class ij.plugin.frame.jedit.syntax.
Token
Returns a string representation of this token.
toString()
- Method in class ij.plugin.frame.jedit.
SyntaxStyle
Returns a string representation of this object.
toString()
- Method in class ij.plugin.frame.jedit.tokenmarker.
Token
Returns a string representation of this token.
toString()
- Method in class ij.process.
FHT
Returns a string containing information about this FHT.
toString()
- Method in class ij.process.
ImageProcessor
Returns a string containing information about this ImageProcessor.
toString()
- Method in class ij.process.
ImageStatistics
toWatershed(ImageProcessor)
- Method in class ij.plugin.filter.
EDM
Do watershed segmentation based on the EDM of the foreground objects (nonzero pixels) in an 8-bit image.
TRACE
- Static variable in class ij.macro.
Interpreter
TRACED_ROI
- Static variable in class ij.gui.
Roi
transAction
- Static variable in class ij2x.plugin.
CollapsiblePane
transButton
- Variable in class ij2x.plugin.
TransformPanel
transform()
- Method in class ij.process.
FHT
Performs a foreward transform, converting this image into the frequency domain.
TRANSFORM
- Static variable in class ij.
Undo
Transformer
- Class in
ij.plugin.filter
Implements the Flip and Rotate commands in the Image/Transform submenu.
Transformer()
- Constructor for class ij.plugin.filter.
Transformer
TransformPanel
- Class in
ij2x.plugin
Title: Description: Copyright: Copyright (c) 2006 Company:
TransformPanel()
- Constructor for class ij2x.plugin.
TransformPanel
translate(int, int)
- Method in class ij.gui.
Overlay
Moves all the Rois in this overlay.
translate(double, double)
- Method in class ij.process.
ImageProcessor
Moves the image or selection vertically or horizontally by a specified number of pixels.
translate(int, int, boolean)
- Method in class ij.process.
ImageProcessor
Deprecated.
replaced by translate(x,y)
Translator
- Class in
ij.plugin.filter
This plugin implements the Image/Translate command.
Translator()
- Constructor for class ij.plugin.filter.
Translator
Translator
- Class in
ij2x.plugin
This plugin implements the Edit/Scale command.
Translator()
- Constructor for class ij2x.plugin.
Translator
transParam
- Variable in class ij2x.plugin.
AlignRGB
TRANSPARENT
- Static variable in class ij.
CompositeImage
TRIANGLE
- Static variable in class ij.gui.
Plot
Display points using an tiangular mark.
TRIANGLE
- Static variable in class ij.gui.
PlotWindow
Display points using an tiangular mark.
trim()
- Method in class ij.
ImageStack
Frees memory by deleting a few slices from the end of the stack.
trim()
- Method in class ij.
VirtualStack
Does nothing.
trimFileList(String[])
- Method in class ij.plugin.
FolderOpener
Removes names that start with "." or end with ".db". ".txt", ".lut", "roi", ".pty" or ".hdr", ".py", etc.
trimKey(String)
- Static method in class ij.
Macro
TrimmedButton
- Class in
ij.gui
This is an extended Button class used to reduce the width of the HUGE buttons on Mac OS X.
TrimmedButton(String, int)
- Constructor for class ij.gui.
TrimmedButton
trimProcessor()
- Method in class ij.
ImagePlus
Frees RAM by setting the snapshot (undo) buffer in the current ImageProcessor to null.
TRUE
- Static variable in interface ij.macro.
MacroConstants
tSelector
- Variable in class ij.gui.
StackWindow
TSQLTokenMarker
- Class in
ij.plugin.frame.jedit.tokenmarker
Transact-SQL token marker.
TSQLTokenMarker()
- Constructor for class ij.plugin.frame.jedit.tokenmarker.
TSQLTokenMarker
type
- Variable in class ij.gui.
Roi
TYPE
- Static variable in class ij.io.
RoiDecoder
type
- Variable in class ij.macro.
Symbol
TYPE_CONVERSION
- Static variable in class ij.
Undo
TypeConverter
- Class in
ij.process
This class converts an ImageProcessor to another data type.
TypeConverter(ImageProcessor, boolean)
- Constructor for class ij.process.
TypeConverter
types
- Static variable in class ij.io.
Opener
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